MCP Server

NeKo Biological Network Builder MCP Server

Name: NeKo Biological Network Builder MCP Server
Author: io.github.marcorusc

io.github.marcorusc/NeKo

Repository Registry

What is the NeKo Biological Network Builder MCP server?

MCP server for biological network construction and analysis using pathway databases

How to install NeKo Biological Network Builder

Copy-paste configuration for popular MCP clients.

transport: stdio

Config generated by PluginBench — verify against the source before use.

Claude Desktop

~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "NeKo": {
      "command": "uvx",
      "args": [
        "mcp-biomodelling-servers",
        "--from",
        "mcp-biomodelling-servers",
        "mcp-neko-server"
      ]
    }
  }
}

Cursor

~/.cursor/mcp.json

{
  "mcpServers": {
    "NeKo": {
      "command": "uvx",
      "args": [
        "mcp-biomodelling-servers",
        "--from",
        "mcp-biomodelling-servers",
        "mcp-neko-server"
      ]
    }
  }
}

Windsurf

~/.codeium/windsurf/mcp_config.json

{
  "mcpServers": {
    "NeKo": {
      "command": "uvx",
      "args": [
        "mcp-biomodelling-servers",
        "--from",
        "mcp-biomodelling-servers",
        "mcp-neko-server"
      ]
    }
  }
}

VS Code

.vscode/mcp.json

{
  "servers": {
    "NeKo": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "mcp-biomodelling-servers",
        "--from",
        "mcp-biomodelling-servers",
        "mcp-neko-server"
      ]
    }
  }
}

Claude Code

claude mcp add NeKo -- uvx mcp-biomodelling-servers --from mcp-biomodelling-servers mcp-neko-server

Related MCP servers

MaBoSS Boolean Network Simulator

MCP server for Boolean network simulation and attractor analysis using MaBoSS

View repository →

PhysiCell Multiscale Simulation Builder

MCP server for configuring PhysiCell multiscale multicellular biological simulations

View repository →