obsidian
bitbonsai/mcpvault
Manage Obsidian vaults via MCP, CLI, and git—read/write notes, repair backlinks, sync with safe defaults.
What is obsidian?
Activate when users mention their Obsidian vault, notes, tags, frontmatter, daily notes, backup, or sync. Routes operations across MCP (vault data), Obsidian CLI (app context), and git (sync/backup) with explicit safety checks and backlink repair workflows.
- Read, write, patch, and search notes via MCP with safe defaults
- Move and rename notes with automatic backlink discovery and repair
- Manage frontmatter, tags, and metadata across notes
- Sync and backup vaults using git with preflight checks and conflict detection
- Open notes in Obsidian app via URI and trigger app-context workflows
- Batch operations on multiple notes with error recovery
How to install obsidian
npx skills add https://github.com/bitbonsai/mcpvault --skill obsidian- Obsidian vault initialized locally
- For git sync: git installed, user.name and user.email configured, at least one remote (GitHub, GitLab, etc.)
- For Obsidian CLI operations: Obsidian 1.12.7+ with CLI enabled (Settings > General > Advanced)
How to use obsidian
- 1.Mention your vault, notes, or sync intent (e.g., 'rename this note' or 'sync my vault')
- 2.For note operations: skill routes to MCP by default; for app context (open in editor, daily notes), it uses Obsidian CLI
- 3.For git sync: skill runs preflight checks (repo, config, remote), then commits, pulls, and pushes with safe defaults
- 4.Review backlink repairs after moves—skill reports which notes changed and any stale references remaining
- 5.Check error messages for specific guidance (e.g., 'add context to make patch unique' or 'initialize git repo')
Use cases
- Rename a note and automatically update all wikilinks pointing to it
- Sync your vault to GitHub with a single command, handling merge conflicts safely
- Search across all notes by keyword or phrase, with frontmatter support
- Update frontmatter tags or metadata across multiple notes at once
- Back up your vault periodically using git with timestamped commits
- Obsidian users managing large vaults with complex link structures
- Knowledge workers syncing notes across devices via git
- Teams collaborating on shared Obsidian vaults
- Users automating note organization and metadata updates
obsidian FAQ
MCP's move_note is text-aware and avoids a bug in the CLI where delayed link rewrites can corrupt unrelated content. Backlink repair is then an explicit, verifiable second step.
search_notes returns at most 20 results. If the cap is hit or the old basename is ambiguous, the skill asks before continuing with a broader scan to ensure exhaustive repair.
This skill focuses on MCP (local vault operations) and git (sync/backup). For cloud sync (Obsidian Sync, iCloud, Dropbox), use Obsidian's native sync or configure git as your backend.
The skill stops and reports the conflict clearly, explaining what failed and what command to run next. It never auto-resolves conflicts silently.
Yes—patch_note matches against the full file including YAML. Include enough context (e.g., surrounding lines) to target the right occurrence and avoid accidental matches in frontmatter fields.
Full instructions (SKILL.md)
Source of truth, from bitbonsai/mcpvault.
name: obsidian description: > Activate when the user mentions their Obsidian vault, notes, tags, frontmatter, daily notes, backup, or sync. Route operations across MCP, Obsidian CLI/app actions, and git sync with safe defaults. metadata: version: "2.2" author: bitbonsai
Obsidian Skill
Routing Policy
Use the backend that best matches user intent:
-
MCP (default for vault data operations)
- Read/write/patch/search notes
- Move/rename notes with
move_note, then explicitly repair backlinks - Frontmatter and tag updates
- Metadata and batch note operations
-
Obsidian CLI/App context (only when app context is needed)
- Open a note in Obsidian from URI
- Trigger app/plugin workflows that MCP cannot perform
-
CLI git (sync/backup workflows)
- Initialize repo, configure remote, commit, pull, push
- Periodic or manual vault backup/sync requests
When a request is ambiguous, pick MCP first unless the user explicitly asks for sync/backup/git/app behavior.
Safe Note Rename Workflow
Use MCP move_note for every note move or rename, even when Obsidian is running. Do not invoke the Obsidian CLI move command automatically: delayed link rewrites can apply stale byte offsets to notes edited after the move began, silently corrupting unrelated content (#176). Reconsider CLI moves only after an upstream fix has been independently retested.
Backlink preservation is an explicit, verifiable second step:
- Before moving, search for the old wikilink target using both its vault-relative path and filename without the extension. If Obsidian is running, its read-only
backlinkscommand may supplement discovery, but it does not replace the MCP search. - Move the note with MCP
move_note. - Read each referring note and patch only exact wikilink targets, including embeds and links with aliases or fragments. Preserve display text (
|alias) and#heading/#^block-idsuffixes while changing the target. - Search again for the old path and basename. Report any remaining references instead of claiming success.
search_notesreturns at most 20 results. If a search reaches that cap, or the old basename is ambiguous, tell the user exhaustive backlink repair cannot be proven and ask before continuing with a broader scan.
Report the move and backlink repair separately: which note moved, how many referring notes changed, and any stale references that remain.
Gotchas
-
patch_note rejects multi-match by default. With
replaceAll: false, ifoldStringappears more than once the call fails and returnsmatchCount. SetreplaceAll: trueonly when you mean it, or add surrounding context to make the match unique. -
patch_note matches inside frontmatter. The replacement runs against the full file including the YAML block. A generic string like
title:will match frontmatter fields. Include enough context to target the right occurrence. -
patch_note forbids empty strings. Both
oldStringandnewStringmust be non-empty and non-whitespace. To delete text, usenewStringwith a single space or restructure the note withwrite_note. -
search_notes returns minified JSON. Fields are abbreviated:
p(path),t(title),ex(excerpt),mc(matchCount),ln(lineNumber),uri(obsidianUri). Hard cap of 20 results regardless oflimit. -
search_notes multi-word queries score terms individually AND as a phrase. Each term is OR-matched, so a document matching any term appears in results. The full phrase gets an additional scoring boost.
-
write_note auto-creates directories. Parent folders are created recursively. In
append/prependmode, if the note doesn't exist it's created. Frontmatter is merged (new keys override) in append/prepend; replaced entirely in overwrite. -
delete_note requires exact path confirmation.
confirmPathmust be character-identical topath. No normalization, no trailing-slash tolerance. Mismatch silently fails withsuccess: false. -
move_file needs double confirmation. Both
confirmOldPathandconfirmNewPathmust exactly match their counterparts. Usemove_notefor markdown renames (text-aware, no confirmation needed); usemove_fileonly for binary files or when you need binary-safe moves. -
manage_tags reads from two sources but writes to one.
listmerges frontmatter tags + inline#hashtags.add/removeonly modify the frontmattertagsarray. Inline tags are never touched. -
read_multiple_notes never rejects. Uses
allSettledinternally. Failed files appear in theerrarray; successful ones inok. Always check both. Hard limit of 10 paths per call.
Error Recovery
| Error | Next step |
|---|---|
| patch_note "Found N occurrences" | Add surrounding lines to oldString to make it unique, or set replaceAll: true |
| delete_note / move_file confirmation mismatch | Re-read the note path with read_note or list_directory, then retry with the exact string |
| search_notes returns 0 results | Try single keywords instead of phrases, toggle searchFrontmatter, or broaden with partial terms |
read_multiple_notes partial err | Verify failed paths with list_directory, fix typos or missing extensions, retry only failed ones |
Git Sync Mode
When the user asks to "sync", "backup", or "store my vault with git", use CLI git with this behavior:
-
Run a preflight before changing anything:
gitavailable- current directory is a git repo (or prompt to initialize)
git config user.nameandgit config user.emailare set- at least one remote exists for push/pull sync
-
If preflight is incomplete, ask exactly one targeted question with a recommended default.
- Use askuserquestion for decisions that materially change behavior.
- Good examples:
- "No git repo found. Initialize one in this vault now? (Recommended: Yes)"
- "No remote configured. Set up GitHub remote now via gh if available, or provide remote URL? (Recommended: Set up via gh)"
- "Local and remote diverged. Try
git pull --rebasenow? (Recommended: Yes)"
-
Safe sync sequence (never force push by default):
git add -Agit commit -m "vault sync: YYYY-MM-DD HH:mm"(skip commit if no changes)git pull --rebasegit push
-
ghis optional:- Use
ghonly for remote bootstrapping (create repo / set origin) when requested. - Do not require
ghfor normal sync once remote is configured.
- Use
-
Stop on conflicts and report clear next steps.
- Do not auto-resolve merge conflicts silently.
- Explain what failed and what user should run next.
Obsidian CLI Mode
When the user asks for app-context operations (active file, open in editor, daily notes with templates, backlinks), use the Obsidian CLI directly via shell commands.
-
Run a preflight before first CLI use:
-
Resolve the CLI binary using the first match from these candidates:
Priority macOS Linux Windows 1 obsidian(PATH)obsidian(PATH)obsidian.exeorObsidian.com(PATH)2 /Applications/Obsidian.app/Contents/MacOS/obsidian-cli— — 3 /Applications/Obsidian.app/Contents/MacOS/Obsidian— — Obsidian 1.12.7+ installer bundles a dedicated
obsidian-clibinary (~10x faster than the legacy Electron-based CLI: ~25ms vs ~250ms per call). On macOS, after installing the 1.12.7+ installer, disable then re-enable the CLI in Settings > General > Advanced to update PATH registration. This replaces the old~/.zprofilePATH entry with a/usr/local/bin/obsidiansymlink pointing toobsidian-cli.On Linux, PATH registration creates a symlink at
/usr/local/bin/obsidian(or~/.local/bin/obsidianas fallback). On Windows, the installer places anObsidian.comterminal redirector alongsideObsidian.exe.Note: The priority table and stale PATH check are verified on macOS only. Linux and Windows may also bundle
obsidian-cliwith the 1.12.7+ installer, but this has not been confirmed. Contributions welcome via issue or PR. -
Stale PATH check (macOS): If priority 1 resolved
obsidianon PATH, check whether it points to the fast binary or the slow Electron launcher:Resolved path Meaning Action /usr/local/bin/obsidian→obsidian-cli1.12.7 symlink registration None — fast binary /Applications/.../MacOS/obsidianOld ~/.zprofileentry (pre-1.12.7 registration or 1.12.7 installer without re-registering)Check if obsidian-cliexists in the bundleIf
obsidianresolves to the MacOS directory (not/usr/local/bin) AND/Applications/Obsidian.app/Contents/MacOS/obsidian-cliexists, tell the user: "Obsidian 1.12.7+ is installed but PATH still points to the slower Electron binary. In Obsidian, go to Settings > General > Advanced and disable then re-enable the CLI to update PATH registration." Continue with whichever priority matched — this is advisory, not blocking. -
Check Obsidian is running:
pgrep -xiq obsidian(macOS/Linux) ortasklist /FI "IMAGENAME eq Obsidian.exe" /NH(Windows) -
If either fails, tell the user and fall back to MCP tools +
obsidian://URIs
-
-
Vault targeting:
obsidian vault="VaultName" <command>. IfOBSIDIAN_VAULT_NAMEis set, use that explicit value. Otherwise runobsidian vaults, match the MCP vault path to a registered vault, and use its registered name. If no unique match exists, ask the user. Never infer the registered name from the folder basename. -
Key commands:
# Read the currently active file obsidian read # Read a specific file obsidian read file="My Note" # Open a file in Obsidian obsidian open path="Notes/example.md" # Open today's daily note obsidian daily # Append to daily note obsidian daily:append content="- [ ] New task" # Search (Obsidian's own search, different from MCP's BM25) obsidian search query="meeting notes" limit=10 # List all tags with frequency obsidian tags sort=count counts # Get backlinks for a note obsidian backlinks file="My Note" # Find unresolved links obsidian unresolvedDo not use
obsidian move; follow Safe Note Rename Workflow with MCPmove_noteand explicit backlink repair. -
Run
obsidian helpfor the full command reference. The CLI evolves with Obsidian releases. -
When to use CLI vs MCP:
- MCP for reads/writes/search/tags/frontmatter and all note moves/renames (sandboxed, validated, works headless)
- CLI for active file, daily notes with template expansion, read-only backlink discovery, open in editor, and plugin commands
- After
move_note, repair and verify backlinks explicitly with the Safe Note Rename Workflow - If unsure, prefer MCP
Resources
Load these only when needed, not on every invocation.
- Tool Patterns - read when you need a tool's response shape, mode details, or the move_note vs move_file decision
- Obsidian Conventions - read when creating/writing note content (link syntax, frontmatter fields, daily note format, template variables)
- Git Sync - read when user asks for backup/sync/store-vault workflows with git/gh
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