How to install paper-compilation
npx skills add https://github.com/lingzhi227/agent-research-skills --skill paper-compilationFull instructions (SKILL.md)
Source of truth, from lingzhi227/agent-research-skills.
name: paper-compilation description: Compile LaTeX papers to PDF with automatic error detection, chktex style checking, and citation/reference validation. Runs the full pdflatex + bibtex pipeline. Use when the user wants to compile a paper, fix compilation errors, or debug LaTeX. argument-hint: [tex-file-path]
Paper Compilation
Compile a LaTeX paper to PDF with error detection and correction.
Input
$ARGUMENTS— Path to the main.texfile
Scripts
Compile paper
python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex
python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex --check-style
python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex --output paper/output.pdf
Reports: compilation status, page count, warnings, citation/reference stats, style issues.
Validate citations before compiling
python ~/.claude/skills/citation-management/scripts/validate_citations.py \
--tex paper/main.tex --bib paper/references.bib --check-figures --figures-dir paper/figures/
Auto-fix LaTeX errors
python ~/.claude/skills/paper-compilation/scripts/fix_latex_errors.py \
--tex paper/main.tex --log compile.log --output paper/main_fixed.tex
Fixes: HTML tags in LaTeX, mismatched environments, missing figures. Key flags: --dry-run, --auto-detect
Compile with auto-fix retry
python ~/.claude/skills/paper-compilation/scripts/compile_paper.py paper/main.tex --auto-fix
Runs fix_latex_errors.py + recompile up to 3 rounds until compilation succeeds.
Workflow
Step 1: Pre-Compilation Validation
Run validate_citations.py to catch issues before compiling:
- Every
\cite{key}has a matching.bibentry - Every
\includegraphics{file}exists - No duplicate labels or sections
Step 2: Compile
Run compile_paper.py which executes: pdflatex → bibtex → pdflatex → pdflatex
Step 3: Error Correction Loop (up to 5 rounds)
If compilation fails, read the error output and fix:
! Undefined control sequence→ Add missing package or fix typo! Missing $ inserted→ Wrap math in$...$! Missing } inserted→ Fix unmatched braceCitation 'key' undefined→ Add to .bib or fix\cite</end{figure}>→ Replace with\end{figure}(HTML syntax in LaTeX)
Apply minimal fixes. Do not remove packages unnecessarily. Recompile after each fix.
Step 4: Post-Compilation Report
Check: page count vs venue limit, remaining warnings, chktex style issues.
Troubleshooting
pdflatex not found
# macOS
brew install --cask mactex-no-gui
# Ubuntu
sudo apt install texlive-full
Alternative: latexmk (auto-handles multiple passes)
latexmk -pdf -interaction=nonstopmode main.tex
Related Skills
- Upstream: latex-formatting, citation-management, figure-generation, table-generation
- Downstream: self-review
- See also: paper-assembly
Related skills
More from lingzhi227/agent-research-skills and the wider catalog.
literature-review
Conduct comprehensive literature reviews using multi-perspective dialogue simulation. Generate diverse expert personas, conduct grounded Q&A conversations, and synthesize findings into structured knowledge. Use when starting a new research project or writing a survey section.
literature-search
Search academic literature using Semantic Scholar, arXiv, and OpenAlex APIs. Returns structured JSONL with title, authors, year, venue, abstract, citations, and BibTeX. Use when the user needs to find papers, check related work, or build a bibliography.
figure-generation
Generate publication-quality scientific figures using matplotlib/seaborn with a three-phase pipeline (query expansion, code generation with execution, VLM visual feedback). Handles bar charts, line plots, heatmaps, training curves, ablation plots, and more. Use when the user needs figures, plots, or visualizations for a paper.
citation-management
Manage BibTeX citations for LaTeX papers. Harvest missing citations from a draft using Semantic Scholar, validate cite keys against .bib files, deduplicate entries, and format bibliography. Use when working with references, BibTeX, or citations.
latex-formatting
Handle LaTeX formatting, templates, and styling for academic papers. Set up conference templates (ICML, ICLR, NeurIPS, AAAI, ACL), fix formatting issues, manage packages, and ensure venue-specific compliance. Use when the user needs to set up a paper template, fix LaTeX formatting, or prepare for submission.
data-analysis
Generate statistical analysis code with 4-round review. Select appropriate statistical tests, interpret results, and produce analysis reports with p-values, effect sizes, and confidence intervals. Use when analyzing experimental data for a paper.