gemini
softaworks/agent-toolkit
Comprehensive code and plan review with large context windows using Gemini 3 Pro
What is gemini?
Gemini skill enables code review, plan review, and analysis of large codebases (>200k tokens) using Google's Gemini models. Use it when you need deep reasoning across multiple files or architectural analysis. Requires careful approval mode selection to avoid hanging in non-interactive environments.
- Comprehensive code reviews across multiple files with security, performance, and quality analysis
- Plan and architectural review for scalability, integration, and design concerns
- Large context processing supporting up to 1M input tokens for entire codebase analysis
- Multi-file relationship and pattern analysis across projects
- Interactive and automated execution modes with configurable approval workflows
How to install gemini
npx skills add https://github.com/softaworks/agent-toolkit --skill gemini- Gemini CLI installed and configured
- Google API credentials set up for Gemini access
- For background tasks: use --approval-mode yolo to prevent hanging
How to use gemini
- 1.Ask the user which Gemini model to use (gemini-3-pro-preview recommended for best reasoning, or gemini-3-flash for speed)
- 2.Select approval mode: use --approval-mode yolo for background/automated tasks, --approval-mode default only for interactive terminals, or --approval-mode auto_edit for code reviews with auto-approval of edits
- 3.Assemble the gemini command with -m <model>, --approval-mode <mode>, and your analysis prompt
- 4.For background execution, optionally wrap with timeout 300 for safety: timeout 300 gemini -m gemini-3-pro-preview --approval-mode yolo "your prompt"
- 5.Run the command and wait for analysis completion, then inform user results are ready for review or follow-up
Use cases
- Security vulnerability scanning and code quality assessment across large codebases
- Architectural plan review for scalability and integration challenges
- Technical debt identification and refactoring opportunity discovery
- Automated code review in CI/CD pipelines with timeout protection
- Interactive code exploration with follow-up analysis capabilities
- Software engineers performing comprehensive code reviews
- Architects evaluating technical plans and system designs
- Teams running automated code analysis in CI/CD pipelines
- Developers analyzing large unfamiliar codebases
- Technical leads assessing code quality and security
gemini FAQ
Using --approval-mode default in non-interactive shells (like Claude Code) causes indefinite waiting for approval prompts that cannot be provided. Always use --approval-mode yolo for background/automated tasks.
Use gemini-3-pro-preview (default) for best reasoning and coding tasks with 35% better software engineering accuracy. Use gemini-3-flash for speed-critical tasks, or gemini-2.5-flash for cost optimization.
Wrap commands with timeout 300 for a 5-minute limit, or use gemini-3-flash for faster processing. For very large codebases, use --include-directories to scope analysis.
Yes, use --approval-mode default only in interactive terminal sessions. For Claude Code and other non-interactive tools, you must use --approval-mode yolo.
Check with ps aux | grep gemini, then kill with pkill -9 -f "gemini.*gemini-3-pro-preview". Symptoms include 20+ minutes runtime with 0% CPU and process state 'S'.
Full instructions (SKILL.md)
Source of truth, from softaworks/agent-toolkit.
name: gemini description: Use when the user asks to run Gemini CLI for code review, plan review, or big context (>200k) processing. Ideal for comprehensive analysis requiring large context windows. Uses Gemini 3 Pro by default for state-of-the-art reasoning and coding.
Gemini Skill Guide
When to Use Gemini
- WHEN ASKED TO BE ACTIVATED
- Code Review: Comprehensive code reviews across multiple files
- Plan Review: Analyzing architectural plans, technical specifications, or project roadmaps
- Big Context Processing: Tasks requiring >200k tokens of context (entire codebases, documentation sets)
- Multi-file Analysis: Understanding relationships and patterns across many files
⚠️ Critical: Background/Non-Interactive Mode Warning
NEVER use --approval-mode default in background or non-interactive shells (like Claude Code tool calls). It will hang indefinitely waiting for approval prompts that cannot be provided.
For automated/background reviews:
- ✅ Use
--approval-mode yolofor fully automated execution - ✅ OR wrap with timeout:
timeout 300 gemini ... - ❌ NEVER use
--approval-mode defaultwithout interactive terminal
Symptoms of hung Gemini:
- Process running 20+ minutes with 0% CPU usage
- No network activity
- Process state shows 'S' (sleeping)
Fix hung process:
# Check if hung
ps aux | grep gemini | grep -v grep
# Kill if necessary
pkill -9 -f "gemini.*gemini-3-pro-preview"
Running a Task
-
Ask the user (via
AskUserQuestion) which model to use in a single prompt. Available models:gemini-3-pro-preview⭐ (flagship model, best for coding & complex reasoning, 35% better at software engineering than 2.5 Pro)gemini-3-flash(sub-second latency, distilled from 3 Pro, best for speed-critical tasks)gemini-2.5-pro(legacy option, strong all-around performance)gemini-2.5-flash(legacy option, cost-efficient with thinking capabilities)gemini-2.5-flash-lite(legacy option, fastest processing)
-
Select the approval mode based on the task:
default: Prompt for approval (⚠️ ONLY for interactive terminal sessions)auto_edit: Auto-approve edit tools only (for code reviews with suggestions)yolo: Auto-approve all tools (✅ REQUIRED for background/automated tasks)
-
Assemble the command with appropriate options:
-m, --model <MODEL>- Model selection--approval-mode <default|auto_edit|yolo>- Control tool approval-y, --yolo- Alternative to--approval-mode yolo-i, --prompt-interactive "prompt"- Execute prompt and continue interactively--include-directories <DIR>- Additional directories to include in workspace-s, --sandbox- Run in sandbox mode for isolation
-
For background/automated tasks, ALWAYS use
--approval-mode yoloor add timeout wrapper. NEVER usedefaultin non-interactive shells. -
Run the command and capture the output. For background/automated mode:
# Recommended: Use yolo for background tasks gemini -m gemini-3-pro-preview --approval-mode yolo "Review this codebase for security issues" # Or with timeout (5 min limit) timeout 300 gemini -m gemini-3-pro-preview --approval-mode yolo "Review this codebase" -
For interactive sessions with an initial prompt:
gemini -m gemini-3-pro-preview -i "Review the authentication system" --approval-mode auto_edit -
After Gemini completes, inform the user: "The Gemini analysis is complete. You can start a new Gemini session for follow-up analysis or continue exploring the findings."
Quick Reference
| Use case | Approval mode | Key flags |
|---|---|---|
| Background code review | yolo ✅ | -m gemini-3-pro-preview --approval-mode yolo |
| Background analysis | yolo ✅ | -m gemini-3-pro-preview --approval-mode yolo |
| Background with timeout | yolo ✅ | timeout 300 gemini -m gemini-3-pro-preview --approval-mode yolo |
| Interactive code review | default | -m gemini-3-pro-preview --approval-mode default (interactive terminal only) |
| Code review with auto-edits | auto_edit | -m gemini-3-pro-preview --approval-mode auto_edit |
| Automated refactoring | yolo | -m gemini-3-pro-preview --approval-mode yolo |
| Speed-critical background | yolo ✅ | -m gemini-3-flash --approval-mode yolo |
| Cost-optimized background | yolo ✅ | -m gemini-2.5-flash --approval-mode yolo |
| Multi-directory analysis | yolo (if background) | --include-directories <DIR1> --include-directories <DIR2> |
| Interactive with prompt | auto_edit or default | -i "prompt" --approval-mode <mode> |
Model Selection Guide
| Model | Best for | Context window | Key features |
|---|---|---|---|
gemini-3-pro-preview ⭐ | Flagship model: Complex reasoning, coding, agentic tasks | 1M input / 64k output | Vibe coding, 76.2% SWE-bench, $2-4/M input |
gemini-3-flash | Sub-second latency, speed-critical applications | 1M input / 64k output | Distilled from 3 Pro, TPU-optimized |
gemini-2.5-pro | Legacy: Strong all-around performance | 1M input / 65k output | Thinking mode, mature stability |
gemini-2.5-flash | Legacy: Cost-efficient, high-volume tasks | 1M input / 65k output | Best price ($0.15/M), thinking mode |
gemini-2.5-flash-lite | Legacy: Fastest processing, high throughput | 1M input / 65k output | Maximum speed, minimal latency |
Gemini 3 Advantages: 35% higher accuracy in software engineering, state-of-the-art on SWE-bench (76.2%), GPQA Diamond (91.9%), and WebDev Arena (1487 Elo). Knowledge cutoff: January 2025.
Coming Soon: gemini-3-deep-think for ultra-complex reasoning with enhanced thinking capabilities.
Common Use Cases
Code Review (Background/Automated)
# For background execution (Claude Code, CI/CD, etc.)
gemini -m gemini-3-pro-preview --approval-mode yolo \
"Perform a comprehensive code review focusing on:
1. Security vulnerabilities
2. Performance issues
3. Code quality and maintainability
4. Best practices violations"
# With timeout safety (5 minutes)
timeout 300 gemini -m gemini-3-pro-preview --approval-mode yolo \
"Perform a comprehensive code review..."
Plan Review (Background/Automated)
# For background execution
gemini -m gemini-3-pro-preview --approval-mode yolo \
"Review this architectural plan for:
1. Scalability concerns
2. Missing components
3. Integration challenges
4. Alternative approaches"
Big Context Analysis (Background/Automated)
# For background execution
gemini -m gemini-3-pro-preview --approval-mode yolo \
"Analyze the entire codebase to understand:
1. Overall architecture
2. Key patterns and conventions
3. Potential technical debt
4. Refactoring opportunities"
Interactive Code Review (Terminal Only)
# ONLY use default mode in interactive terminal
gemini -m gemini-3-pro-preview --approval-mode default \
"Review the authentication flow for security issues"
Following Up
- Gemini CLI sessions are typically one-shot or interactive. Unlike Codex, there's no built-in resume functionality.
- For follow-up analysis, start a new Gemini session with context from previous findings.
- When proposing follow-up actions, restate the chosen model and approval mode.
- Use
AskUserQuestionafter each Gemini command to confirm next steps or gather clarifications.
Error Handling
- Stop and report failures whenever
gemini --versionor a Gemini command exits non-zero. - Request direction before retrying failed commands.
- Before using high-impact flags (
--approval-mode yolo,-y,--sandbox), ask the user for permission usingAskUserQuestionunless already granted. - When output includes warnings or partial results, summarize them and ask how to adjust using
AskUserQuestion.
Troubleshooting Hung Gemini Processes
Detection
# Check for hung processes
ps aux | grep -E "gemini.*gemini-3" | grep -v grep
# Look for these symptoms:
# - Process running 20+ minutes
# - CPU usage at 0%
# - Process state 'S' (sleeping)
# - No network connections
Diagnosis
# Get detailed process info
ps -o pid,etime,pcpu,stat,command -p <PID>
# Check network activity
lsof -p <PID> 2>/dev/null | grep -E "(TCP|ESTABLISHED)" | wc -l
# If result is 0, process is hung
Resolution
# Kill hung Gemini processes
pkill -9 -f "gemini.*gemini-3-pro-preview"
# Or kill specific PID
kill -9 <PID>
# Verify cleanup
ps aux | grep gemini | grep -v grep
Prevention
- ALWAYS use
--approval-mode yolofor background/automated tasks - Add timeout wrapper for safety:
timeout 300 gemini ... - Never use
--approval-mode defaultin non-interactive shells - Monitor first run with
psto ensure process completes
Tips for Large Context Processing
- Be specific: Provide clear, structured prompts for what to analyze
- Use include-directories: Explicitly specify all relevant directories
- Choose the right model:
- Use
gemini-3-pro-previewfor complex reasoning, coding tasks, and maximum analysis quality (recommended default) - Use
gemini-3-flashfor speed-critical tasks requiring sub-second response times - Use
gemini-2.5-flashfor cost-optimized high-volume processing
- Use
- Leverage Gemini 3's strengths: 35% better at software engineering tasks, exceptional at agentic workflows and vibe coding
- Break down complex tasks: Even with large context, structured analysis is more effective
- Save findings: Ask Gemini to output structured reports that can be saved for reference
CLI Version
Requires Gemini CLI v0.16.0 or later for Gemini 3 model support. Check version: gemini --version
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