MCP Server

Active

BSD-3-Clause

Cytoscape Desktop MCP MCP Server

io.github.cytoscape/cytoscape-desktop-mcp-bridge

Repository Registry

What is the Cytoscape Desktop MCP MCP server?

Drive a running Cytoscape Desktop to load, lay out, and style biological networks.

How to install Cytoscape Desktop MCP

Copy-paste configuration for popular MCP clients.

transport: stdio

Config generated by PluginBench — verify against the source before use.

Environment / auth

CYREST_PORT
Port Cytoscape Desktop's REST interface listens on (Edit > Preferences > REST API)

~/Library/Application Support/Claude/claude_desktop_config.json

{
  "mcpServers": {
    "cytoscape-desktop-mcp-bridge": {
      "command": "npx",
      "args": [
        "-y",
        "@cytoscape/cytoscape-desktop-mcp-bridge"
      ],
      "env": {
        "CYREST_PORT": "<YOUR_CYREST_PORT>"
      }
    }
  }
}

Related MCP servers

Codex ServerOps MCP

Active

Stateful Windows OpenSSH server operations for Codex with local credential handling.

Python

MIT

View repository →

Krita Codex MCP

Active

Control Krita through a secure local MCP server and authenticated Windows bridge.

Python

MIT

View repository →

carsensor Price Range MCP Server for AI Agents

Maintained

Get a used car's market-price range (min/max/median) by model and year from carsensor.net.

JavaScript

ISC

View repository →

Clipboard History MCP

Active

Claude-accessible clipboard history with type classification, secret encryption, and Touch ID gating.

Rust

MIT

View repository →

MCP SSH Gateway

Active

SSH terminals for AI agents: stateful shells, exit codes the moment a command ends, router CLIs.

Python

MIT

View repository →

CrazySEO

Active

Audit whether ChatGPT, Gemini and Perplexity recommend a site. Readiness checks need no keys.

TypeScript

AGPL-3.0

View repository →